GitHub topics: rna-seq-pipeline

Repositories

MillerLab-CPHG/RNA_Seq-Flow

RNA-Seq Analysis pipeline using Snakemake workflow

Language: Python - Size: 330 KB - Last synced at: about 2 months ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 2

czheluo/Teach-Bioinformatics-R-dataviz

Materials for "Teaching Bioinformatics and R for dataviz course" June-August 2019 in Majorbio

Language: R - Size: 28 MB - Last synced at: about 1 month ago - Pushed at: about 5 years ago - Stars: 7 - Forks: 4

evolomics-group/rna-seq-pipeline

In development scripts for EvolOMICs group's NGS Data Analysis Pipeline

Language: Shell - Size: 3.48 MB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0

Neste projeto descrevo diferentes parâmetros e opções para a execução de programas necessários à análise de Rna-Seq, além de incluir informações e opniões que possam facilitar a escolha da melhor opção que se adque à análise em questão.

Language: R - Size: 3.45 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

kopalgarg/RNA-seq-SRA

Language: wdl - Size: 6.84 KB - Last synced at: over 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

bio-TAGI/Hackathon

Analysis of mutations at codon 625 of SF3B1 gene in uveal melanoma

Language: R - Size: 3.53 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 3

WestGermanGenomeCenter/circrna_detection

circs_snake : a snakemake-based circRNA detection workflow

Language: Python - Size: 19.6 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1

kevincjnixon/autoDE

Automated DE analysis by DESeq2

Language: R - Size: 38.1 KB - Last synced at: about 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

arkanivasarkar/RNAseq-Data-Analysis-Pipeline

Pipeline for analyzing RNAseq data of human and mouse - beginner friendly with minimal user inputs

Language: R - Size: 1.52 MB - Last synced at: 3 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1

anishchakka/rnaseq

This repository contains all the scripts necessary to perform RNA-Seq analysis on HTC CRC Pitt.

Language: Shell - Size: 20.5 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

villegar/RuNAs

RNA-seq pipeline

Language: Python - Size: 19.4 MB - Last synced at: 4 days ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

Kur1sutaru/16SrDNA_stats Fork of tiagofalconlopes/16SrDNA_stats

A simple code to analyze OTU table and RNA-seq normalization in R

Language: R - Size: 14.7 MB - Last synced at: 7 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

sing-group/dewe

DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.

Language: Java - Size: 1.38 MB - Last synced at: over 2 years ago - Pushed at: over 6 years ago - Stars: 3 - Forks: 0

rstats-tartu/simulate-rnaseq

Workflow to simulate an RNA-seq reads and perform DE-analysis

Language: Python - Size: 26.4 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

Language: Shell - Size: 418 KB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0

bissessk/Whole-Genome-Bioinformatic-Analysis-of-Skin-from-Three-Immunologically-Diverse-Mouse-Models

Performed a differential gene expression analysis with RNA-seq on three immunologically diverse mouse models. Differentially expressed genes were identified and a GO term enrichment analysis was done to determine their roles.

Size: 2.89 MB - Last synced at: over 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0