Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: omics

jpquast/protti

Picotti lab data analysis package.

Language: R - Size: 37.7 MB - Last synced: about 15 hours ago - Pushed: 1 day ago - Stars: 56 - Forks: 5

theGreatHerrLebert/rustims

A Framework for IMS-MS Raw Data Processing written in Rust and Python.

Language: Rust - Size: 37 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 4 - Forks: 1

bigomics/omicsplayground

Visual self-service analytics platform for big omics data.

Language: R - Size: 1.15 GB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 115 - Forks: 34

fgcz/bfabricShiny

Manage life sciences data using R and b-fabric - a WSDL/REST interface and a tool box; main focus on MS data

Language: R - Size: 1.14 MB - Last synced: 1 day ago - Pushed: 2 days ago - Stars: 8 - Forks: 1

cafferychen777/MicrobiomeStat

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Language: R - Size: 15.7 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 24 - Forks: 3

cafferychen777/MicrobiomeStat-Turtorial-Professional-Version

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

Size: 176 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 2 - Forks: 2

omicsEye/massSight

An R package for the alignment and scaling of LC-MS metabolomics data

Language: R - Size: 13.5 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 2 - Forks: 0

solislemuslab/HighDimMixedModels.jl

Julia package for fitting regularized linear mixed-effect models on high-dimensional omics data.

Language: Julia - Size: 11.7 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 3 - Forks: 1

saezlab/FUNKI

FUNctional analysis worKflows Interface

Language: Python - Size: 13 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 3 - Forks: 1

Asa12138/pctax

Professional Comprehensive Omics Data Analysis

Language: R - Size: 11.1 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 4 - Forks: 1

DNAstack/dnastack-client

The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

Language: Python - Size: 349 KB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 0 - Forks: 0

tbcgit/omdctk

OMD Curation Toolkit is a python package designed for the download and curation of metadata and fastq files of public omics datasets.

Language: Python - Size: 7.73 MB - Last synced: 10 days ago - Pushed: 10 days ago - Stars: 2 - Forks: 0

moritzmadern/Simple_MetaStudy

R script to perform simple meta analysis on multiple individually curated bioinformatics datasets

Size: 8.99 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 0

aws-samples/amazon-omics-webapp-integrations

This project contains the webapp sample integrated with Amazon Omics, which allows users such as admin and bioinformaticians to operate Amazon Omics workflow easily and check the run command status with charts and tables.

Language: Vue - Size: 4.08 MB - Last synced: 12 days ago - Pushed: 13 days ago - Stars: 10 - Forks: 1

abbvie-external/OmicNavigator

Open-Source Software for Omic Data Analysis and Visualization

Language: R - Size: 56.6 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 28 - Forks: 8

sdsc-ordes/modo-schema

Metadata schema for the SMOC Multi-Omics Digital-Object

Language: Python - Size: 995 KB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0

MannLabs/OmicLearn Fork of OmicEra/OmicLearn

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

Language: Python - Size: 22.2 MB - Last synced: 13 days ago - Pushed: 14 days ago - Stars: 28 - Forks: 6

Aavache/awesome-genetic-ai-papers

Recent awesome AI papers about genomics.

Size: 9.77 KB - Last synced: 15 days ago - Pushed: 15 days ago - Stars: 0 - Forks: 0

PengBingming/idbview

A database and interactive platform for respiratory-associated disease.

Language: R - Size: 82 MB - Last synced: 22 days ago - Pushed: 23 days ago - Stars: 0 - Forks: 0

2n3m/2n3m

Biomedicine, Pharma, Life Science, IT Consulting

Size: 68.4 KB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 0 - Forks: 0

pachterlab/voyager

From geospatial to spatial -omics

Language: R - Size: 4.1 GB - Last synced: 28 days ago - Pushed: 29 days ago - Stars: 60 - Forks: 6

futianfan/GenoCraft

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

Language: SCSS - Size: 68.2 MB - Last synced: 18 days ago - Pushed: about 1 month ago - Stars: 13 - Forks: 0

rajewsky-lab/openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

Language: HTML - Size: 170 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 25 - Forks: 7

sdsc-ordes/modo-api

Python API to manage multi-omics digital objects

Language: Python - Size: 736 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

maxplanck-ie/Rseurat

Single Cell RNA-seq Course

Language: R - Size: 17.2 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 0

kstawiski/OmicSelector

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Language: R - Size: 54.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 30 - Forks: 3

cran-task-views/Omics

CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Size: 72.3 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 15 - Forks: 4

shenwanxiang/bidd-aggmap

Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool

Language: Jupyter Notebook - Size: 871 MB - Last synced: 16 days ago - Pushed: about 2 months ago - Stars: 33 - Forks: 5

Tiago-Minuzzi/HamleTE

Find and classify transposable elements using convolutional neural networks.

Language: Python - Size: 167 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 1 - Forks: 0

cwieder/py-ssPA

Single sample pathway analysis tools for omics data

Language: Jupyter Notebook - Size: 8.05 MB - Last synced: 13 days ago - Pushed: about 2 months ago - Stars: 9 - Forks: 4

scverse/Muon.jl

Muon for Julia

Language: Julia - Size: 895 KB - Last synced: 10 days ago - Pushed: 2 months ago - Stars: 25 - Forks: 5

Reed-CompBio/spras

Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)

Language: Python - Size: 11.8 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 6 - Forks: 15

EBI-Metagenomics/holofood-database

HoloFood is a project investigating sustainable food production through hologenomics. This Django app is the data portal where samples and other datasets from the project are made publicly available.

Language: Python - Size: 20.3 MB - Last synced: about 1 month ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

DEMENT-Model/DEMENTpy

A spatially explicit trait- and individual-based microbial systems modelling framework

Language: Python - Size: 29.3 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 13 - Forks: 4

leandrotiburske/BipolarDisorder

Transcriptome analysis from patients with Bipolar Affective Disorder

Language: R - Size: 68.4 KB - Last synced: 2 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

saramasarone/enrich_omics

A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)

Language: Python - Size: 3.18 MB - Last synced: 14 days ago - Pushed: 3 months ago - Stars: 17 - Forks: 0

ursgal/ursgal

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

Language: Python - Size: 13.1 MB - Last synced: 7 days ago - Pushed: 3 months ago - Stars: 42 - Forks: 32

huangwb8/GSClassifier

A comprehensive classification tool based on pure transcriptomics for precision medicine

Language: R - Size: 32.2 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 1 - Forks: 1

hsaxe/Omics-Analyst

R package to facilitate omics analyses

Language: R - Size: 50.8 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

KechrisLab/kechrislab.github.io

Kechris Homepage

Language: SCSS - Size: 23 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

selbouhaddani/PO2PLS

Probabilistic O2PLS

Language: R - Size: 3.03 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 2 - Forks: 3

breimanntools/xomics

Python framework for explainable omics analysis

Language: Jupyter Notebook - Size: 16.8 MB - Last synced: 6 days ago - Pushed: 3 months ago - Stars: 6 - Forks: 0

YuanLabZJU/crca-proteome

Code scripts for ’Prediction of overall survival in stage II and III Colon Cancer through Machine Learning of Rapidly-acquired Proteomics‘

Language: R - Size: 4.4 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

dandycodingpipe/pubAssociationFinder

Bioinformatics, Omics, NLP : Masters 1st year internship project

Language: R - Size: 7.1 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

tubanlee/MD

Matrix dissimilarity from the differences of Moments and sparsity

Language: R - Size: 2.42 MB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 56 - Forks: 3

perrin-isir/xomx

a python library providing data processing and machine learning tools for computational omics, with emphasis on explainability

Language: Python - Size: 13.4 MB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 5 - Forks: 3

santorsola-teaching/class-lab-adv-omics-2023

Repository for the Course "Laboratory of Advanced Bioinformatics for Omics Sciences", in the Curriculum "Molecular and Digital Biology" of the M.Sc. Molecular Biology and Genetics, University of Pavia

Language: HTML - Size: 296 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

fraenkel-lab/OmicsIntegrator2

Prize-Collecting Steiner Forests for Interactomes

Language: Jupyter Notebook - Size: 39.8 MB - Last synced: 17 days ago - Pushed: 4 months ago - Stars: 51 - Forks: 24

flowhub-team/awesome-omics

A collection of awesome things regarding all omics.

Size: 123 KB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 535 - Forks: 61

Maximvan/AHTAOmicsAnalysisPCOS

Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University

Size: 24.1 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 1 - Forks: 0

DannyArends/CTLmapping

Correlated Trait Locus (CTL) mapping

Language: R - Size: 12.9 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 5 - Forks: 4

saifeldeen-bio/MultiOmics

MOFA (Multi-Omics Factor Analysis) is a computational framework and statistical method designed for the integration and analysis of multi-omics data.

Language: R - Size: 4.88 KB - Last synced: 4 months ago - Pushed: 5 months ago - Stars: 0 - Forks: 0

Starlitnightly/omicverse

A python library for multi omics included bulk and single cell RNA-seq analysis.

Language: Jupyter Notebook - Size: 604 MB - Last synced: 5 months ago - Pushed: 5 months ago - Stars: 133 - Forks: 20

BiomedSciAI/Geno4SD

An python omics data toolkit for the analysis across biological scales

Language: Jupyter Notebook - Size: 78.1 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 6 - Forks: 1

TulaneMBB/ImageNomer

fMRI and omics viewer for quality control and data exploration

Language: Jupyter Notebook - Size: 141 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 2 - Forks: 0

amitjavilaventura/plotmics

Visualize omics and sequencing data in R.

Language: R - Size: 54.9 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

nunososorio/Reduce.Streamlit.App

This application provides an interactive visualization of dimensionality reduction techniques applied to a 2D and 3D demo datasets. The dimensionality reduction methods used in this application are PCA, t-SNE, and UMAP. This application is for educational purposes.

Language: Python - Size: 42 KB - Last synced: 4 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

JacobAgerbo/JAR.github.io

My Academic webpage

Language: CSS - Size: 52.6 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 0 - Forks: 1

amarinderthind/decontaminer

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x

Language: Perl - Size: 1.44 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 6 - Forks: 0

pmb59/sc-lymphomagenesis

Single-cell atlas of lymphoma evolution

Language: Nextflow - Size: 47.9 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 1

ginkgobioworks/geckopy

Enzyme-constrained genome-scale models in python

Language: Python - Size: 4.84 MB - Last synced: 18 days ago - Pushed: 7 months ago - Stars: 23 - Forks: 4

buschlab/MIRACUM-Pipe-singularity

MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

Language: R - Size: 5.52 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 4 - Forks: 1

mixOmicsTeam/mixOmics

Development repository for the Bioconductor package 'mixOmics '

Language: R - Size: 16.1 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 126 - Forks: 47

mattfaltyn/mojomics Fork of traincheckai/mojomics

Supercharging bioinformaticians with 🔥

Language: Jupyter Notebook - Size: 13.7 KB - Last synced: 4 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

traincheckai/mojomics

Supercharging bioinformaticians with🔥

Language: Jupyter Notebook - Size: 13.7 KB - Last synced: 3 months ago - Pushed: 7 months ago - Stars: 10 - Forks: 2

JacobAgerbo/academicpages.github.io Fork of academicpages/academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

Language: JavaScript - Size: 64.5 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

NhanNguyen000/RegOmics

This repository is the code source for the RegOmics tool - Regulatory extraction for Omics data.

Language: R - Size: 15.6 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 0

KatrionaGoldmann/volcano3D

An R package to plot interactive three-way differential expression analysis

Language: HTML - Size: 219 MB - Last synced: 17 days ago - Pushed: 9 months ago - Stars: 31 - Forks: 7

FerranC96/sKG4cellCommns

Yale Collab with Aarthi (Smita Krishnaswamy group) where I built signalling knowledge graphs to capture cell communications.

Language: Jupyter Notebook - Size: 222 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 0 - Forks: 0

slipnitskaya/regulAS

regulAS: A Bioinformatics Tool for the Integrative Analysis of Alternative Splicing Regulome using RNA-Seq data

Language: Python - Size: 609 KB - Last synced: 9 days ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

K2SOHIGH/MOOSE

MOOSE : MetaOmics and Omics SuitE

Language: Python - Size: 356 KB - Last synced: 4 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 1

mattfaltyn/GeoGWAS Fork of traincheckai/GeoGWAS

Leveraging geometric techniques and graph neural networks to uncover meaningful biology from GWAS data

Language: Jupyter Notebook - Size: 45.4 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

traincheckai/GeoGWAS

Leveraging geometric techniques and graph neural networks to uncover meaningful biology from GWAS data

Language: Jupyter Notebook - Size: 45.4 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 2 - Forks: 2

ngiangre/cohorts

A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data

Language: Jupyter Notebook - Size: 837 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 7 - Forks: 1

krassowski/multi-omics-state-of-the-field

Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"

Language: Jupyter Notebook - Size: 16.6 MB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 23 - Forks: 10

traincheckai/geometric-omics

Geometric Toolkit for Omics Data Analysis and Modeling

Language: Jupyter Notebook - Size: 102 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 1

jmw86069/jamma

Jam MA-plots, volcano plots, other relevant genomics visualizations

Language: R - Size: 28.7 MB - Last synced: 9 months ago - Pushed: 11 months ago - Stars: 0 - Forks: 1

awakenedhaki/weaver

Gene set enrichment network visualization

Language: R - Size: 30.3 KB - Last synced: 3 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

biomedbigdata/keypathwayminer-R

R package for de novo pathway enrichment using KeyPathwayMiner

Language: R - Size: 39.9 MB - Last synced: about 1 month ago - Pushed: 11 months ago - Stars: 4 - Forks: 1

Moonipur/VisDOm

Suite-packages for visualizing ana analyzing omics data

Language: Python - Size: 7.82 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

OmicEra/OmicLearn

🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data

Language: Python - Size: 7.89 MB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 52 - Forks: 12

akialbz/ACS

ACS

Language: Python - Size: 152 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

BIMSBbioinfo/deconvR

The deconvR is an R package designed for analyzing deconvolution of the bulk sample(s) using an atlas of reference omic signature profiles and a user-selected model.

Language: R - Size: 39.8 MB - Last synced: 6 months ago - Pushed: about 1 year ago - Stars: 10 - Forks: 3

idrblab/NOREVA

R Package for Systematic Optimization of Metabolomic Data Processing

Language: R - Size: 4.02 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 13 - Forks: 5

marmarelis/QDiffusion.jl

Leveraging the full dimensionality of single-cell transcriptomics (among other things!)

Language: Julia - Size: 534 KB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

shyammarjit/SAGA

SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data

Language: Jupyter Notebook - Size: 32.8 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 3 - Forks: 1

GCS-ZHN/socube

A simple python package for doublet detection in scRNA-seq data

Language: Python - Size: 4.37 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 7 - Forks: 5

masadler/smrivw Fork of jianyangqt/smr

SMR-IVW extension of the SMR software

Language: C++ - Size: 3.44 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 2 - Forks: 3

snail123815/oleveler

This is mirror repository of https://gitlab.services.universiteitleiden.nl/duc/oleveler

Language: Python - Size: 10.8 MB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

ComputationalProteomics/OmicLoupe

Understanding expression across comparisons and datasets through interactive visualization

Language: R - Size: 2.72 MB - Last synced: about 23 hours ago - Pushed: over 1 year ago - Stars: 2 - Forks: 3

transbioZI/BioMM

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

Language: HTML - Size: 12.2 MB - Last synced: 26 days ago - Pushed: over 1 year ago - Stars: 14 - Forks: 1

soumitag/multiSLIDE

Multi-omics Systems-Level Interactive Data Exploration (multiSLIDE)

Language: Java - Size: 525 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 3 - Forks: 1

biocore/gneiss

compositional data analysis toolbox

Language: Jupyter Notebook - Size: 32.8 MB - Last synced: 6 days ago - Pushed: over 1 year ago - Stars: 55 - Forks: 27

selbouhaddani/POPLSDA

Probabilistic OPLS discriminant analysis

Language: R - Size: 2.93 KB - Last synced: 10 months ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

AlexCoul/mosna

mosna stands for multi-omics spatial network analysis

Language: Python - Size: 48.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 1

huangwb8/luckyModel

Model ensemble for third-party lucky series, such GSClassifier

Language: R - Size: 19 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

LUK3D/hivy.space

🚀 Welcome to Hivy Space, the home for All Anime, Animation, Comic and Manga Lovers

Language: TypeScript - Size: 1.75 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 5 - Forks: 0

idrblab/socube Fork of GCS-ZHN/socube

A simple python package for doublet detection in scRNA-seq data. This repo is read-only, please visit GCS-ZHN/socube to submit issue and PR.

Language: Python - Size: 3.53 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

benben-miao/OmicsFlowBuilder

Omics Flow Builders, such as Cromwell (Java), Nextflow (Java), Snakemake (Python).

Language: Python - Size: 55.7 KB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

RackS103/Omics_Analysis_Scripts

A compilation of functions and scripts I've created to streamline analysis of phosphoproteomic data in Python!

Language: Python - Size: 10.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

Related Keywords
omics 175 bioinformatics 47 r 30 genomics 21 proteomics 20 transcriptomics 19 visualization 15 machine-learning 15 rna-seq 12 single-cell 10 r-package 9 omics-data-integration 9 python 9 metabolomics 8 multi-omics 8 ngs 7 microbiome 7 data-analysis 7 computational-biology 6 data-integration 6 mass-spectrometry 6 scrna-seq 5 metagenomics 5 data-science 5 gwas 5 integration 4 snakemake 4 quality-control 4 gene-expression 4 systems-biology 4 bioconductor 4 genome 3 genetics 3 dna 3 biomarker-discovery 3 geometric-deep-learning 3 heatmap 3 workflow 3 data-visualization 3 precision-medicine 3 protein 3 rstats 3 drug-discovery 3 deep-learning 3 pathway-enrichment-analysis 3 r-stats 3 reporting 3 network 3 biology 3 pca 3 latent-variable-models 3 microbiome-workflow 3 analysis 3 statistics 3 omics-data 3 doublet-detection 2 enrichment-analysis 2 longitudinal-data 2 pathway-analysis 2 metagenomes 2 next-generation-sequencing 2 bulk-rna-seq 2 spatial-transcriptomics 2 spatial 2 metagenomic-analysis 2 bioconductor-package 2 genomics-data 2 microbiome-analysis 2 eda 2 microbiome-data 2 proteomics-data 2 high-performance-computing 2 mojo 2 high-dimensional-data 2 genomics-visualization 2 bacteria 2 rna-seq-analysis 2 interactive 2 fungus 2 shiny 2 o2pls 2 multiomics 2 pls 2 clustering 2 api 2 16s-rrna 2 cran 2 fmri-analysis 2 chip-seq 2 feature-selection 2 deep-neural-networks 2 plsda 2 nextflow 2 drug-repurposing 2 cancer-genomics 2 website 2 education 2 software 2 data-management 2 omics-data-analysis 2