GitHub topics: rna-seq
royfrancis/seqhub
Guide and links related to bulk and single-cell RNA-Seq experiments.
Language: TeX - Size: 37.2 MB - Last synced at: about 1 hour ago - Pushed at: about 2 hours ago - Stars: 1 - Forks: 0
microsoft/hce-classification
Code to implement the hierarchical cross-entropy loss for single-cell annotation models
Language: Python - Size: 8.09 MB - Last synced at: about 4 hours ago - Pushed at: about 5 hours ago - Stars: 0 - Forks: 0
SViswanathanLab/snakemake-RNAseq
Standard RNAseq analysis pipeline using snakemake.
Language: Python - Size: 150 KB - Last synced at: about 20 hours ago - Pushed at: about 21 hours ago - Stars: 0 - Forks: 1
nf-core/scrnaseq
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
Language: Nextflow - Size: 43.5 MB - Last synced at: about 9 hours ago - Pushed at: about 10 hours ago - Stars: 265 - Forks: 188
UK-SBCoA-EbbertLab/RNApysoforms
A Python adaptation of ggtranscript with similar functionality, using Plotly and Polars for fast and interactive RNA isoform visualizations.
Language: Jupyter Notebook - Size: 11.7 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 4 - Forks: 0
nf-core/rnafusion
RNA-seq analysis pipeline for detection of gene-fusions
Language: Nextflow - Size: 19.2 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 153 - Forks: 110
snakemake-workflows/rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Language: Python - Size: 5.82 MB - Last synced at: about 23 hours ago - Pushed at: 1 day ago - Stars: 68 - Forks: 45
deweylab/MetaSRA-pipeline
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
Language: Python - Size: 27.4 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 43 - Forks: 14
epigen/macrophage-regulation
Integrated time series analysis and high-content CRISPR screening delineates the dynamics of macrophage immune regulation
Language: Jupyter Notebook - Size: 29.1 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 3 - Forks: 0
jsa-aerial/aerobio
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
Language: Clojure - Size: 1.11 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 10 - Forks: 1
whl-usc/rna2d3d
Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.
Language: Python - Size: 52 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1 - Forks: 0
markziemann/dee2
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Language: Shell - Size: 56 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 40 - Forks: 7
actapia/rna_clique
Compute genetic distance matrices using RNA-seq data alone
Language: Python - Size: 851 KB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 0 - Forks: 0
datirium/workflows
CWL based Bioinformatics Workflows
Language: Common Workflow Language - Size: 3.02 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 16 - Forks: 16
pachterlab/gget
🧬 gget enables efficient querying of genomic reference databases
Language: Python - Size: 329 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 1,014 - Forks: 77
stjude/CICERO
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
Language: Perl - Size: 8.38 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 38 - Forks: 21
saeyslab/nichenetr
NicheNet: predict active ligand-target links between interacting cells
Language: R - Size: 152 MB - Last synced at: about 8 hours ago - Pushed at: about 9 hours ago - Stars: 534 - Forks: 124
milaboratory/mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Language: Kotlin - Size: 47 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 350 - Forks: 80
IlyinVyacheslav/BioInformatics
Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course
Language: Jupyter Notebook - Size: 14.5 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
scRNA-tools/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
Language: R - Size: 128 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 319 - Forks: 77
carushi/reactIDR
Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification
Language: Jupyter Notebook - Size: 2.47 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 4 - Forks: 1
bixBeta/nextflow
nextflow RNAseq pipeline for GG02
Language: Nextflow - Size: 2.89 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 1
nf-core/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language: Nextflow - Size: 71.5 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1,016 - Forks: 748
lcscs12345/riboss
Comparing translation of open reading frames within individual transcripts
Language: Python - Size: 262 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 1
BimberLab/nimble-aligner
nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data
Language: Rust - Size: 519 KB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 1
ablab/IsoQuant
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Language: Python - Size: 19.6 MB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 162 - Forks: 15
agitter/single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
Size: 699 KB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 424 - Forks: 62
sequana/sequana
Sequana: a set of Snakemake NGS pipelines
Language: Jupyter Notebook - Size: 35.8 MB - Last synced at: 2 days ago - Pushed at: about 2 months ago - Stars: 146 - Forks: 27
jarnokoetsier/PAR1KO-iVSMCs
PDGF-BB induced thrombo-inflammation in vascular smooth muscle cells requires functional PAR1 signaling
Language: R - Size: 6.84 KB - Last synced at: 6 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0
FeelLiao/rna-seq-std
RNA-Seq analysis workflow based on snakemake
Language: Python - Size: 7.54 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 1 - Forks: 0
IGS/gEAR
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Language: Jupyter Notebook - Size: 241 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 15 - Forks: 5
crazyhottommy/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
Language: Python - Size: 548 KB - Last synced at: 1 day ago - Pushed at: over 3 years ago - Stars: 1,002 - Forks: 310
theislab/single-cell-best-practices
https://www.sc-best-practices.org
Language: Jupyter Notebook - Size: 603 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 885 - Forks: 212
snail123815/pybioinfo
Scripts to be used as a bioinformatician, currently in microbiology field.
Language: Python - Size: 4.24 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 0 - Forks: 0
rnabioco/clustifyr
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
Language: R - Size: 60.1 MB - Last synced at: 7 days ago - Pushed at: 8 days ago - Stars: 121 - Forks: 15
PavlidisLab/rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Language: Shell - Size: 43.5 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 24 - Forks: 5
shaorray/TU_filter
A local TU annotation tool for multi-sample comparison
Language: R - Size: 1.77 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 3 - Forks: 1
benben-miao/TOmicsVis
Transcriptomics Visualization R package.
Language: R - Size: 198 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 71 - Forks: 15
y9c/cutseq
✂️ Trim sequencing adapters from NGS data automatically
Language: Python - Size: 3.53 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 12 - Forks: 0
tucca-cellag/tucca-rna-seq
[UNDER-CONSTRUCTION] TUCCA's RNA-Seq Snakemake Workflow for Cellular Agriculture Projects
Language: Python - Size: 845 KB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 1 - Forks: 0
zhangyuqing/ComBat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
Language: R - Size: 597 MB - Last synced at: about 16 hours ago - Pushed at: over 4 years ago - Stars: 177 - Forks: 38
epigen/genome_tracks
A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Language: Python - Size: 118 KB - Last synced at: 9 days ago - Pushed at: 4 months ago - Stars: 23 - Forks: 1
owkin/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Language: Python - Size: 1.36 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 641 - Forks: 74
senzhaocode/FuSViz
A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.
Language: JavaScript - Size: 86.8 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 10 - Forks: 4
CDCgov/tostadas
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Language: Python - Size: 48.8 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 27 - Forks: 13
compbiolover/CCSinglecell
A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.
Language: R - Size: 1.02 GB - Last synced at: 6 days ago - Pushed at: 10 days ago - Stars: 6 - Forks: 2
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Language: Python - Size: 78.1 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 25 - Forks: 6
helicalAI/helical
This repository contains the python package for Helical
Language: Python - Size: 21.9 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 107 - Forks: 14
PejLab/Pantry
Pan-transcriptomic phenotyping
Language: Python - Size: 14.3 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 16 - Forks: 0
lpantano/DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
Language: R - Size: 51.7 MB - Last synced at: 8 days ago - Pushed at: about 1 year ago - Stars: 25 - Forks: 16
bigomics/omicsplayground
Visual self-service analytics platform for big omics data.
Language: R - Size: 1.2 GB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 125 - Forks: 36
bioinfodlsu/regulated-cell-death-playground
Collection of analysis scripts and notebooks related to regulated cell death
Language: HTML - Size: 85.9 MB - Last synced at: 12 days ago - Pushed at: 12 days ago - Stars: 0 - Forks: 0
KrasnitzLab/RAIDS
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
Language: R - Size: 8.52 MB - Last synced at: 12 days ago - Pushed at: 13 days ago - Stars: 5 - Forks: 4
jkobject/scPRINT 📦
single cell foundation model for Gene network inference and more
Language: Jupyter Notebook - Size: 637 MB - Last synced at: 3 days ago - Pushed at: 7 months ago - Stars: 16 - Forks: 9
nf-core/spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Language: Nextflow - Size: 7.02 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 61 - Forks: 22
GoekeLab/bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Language: R - Size: 549 MB - Last synced at: 8 days ago - Pushed at: 9 days ago - Stars: 206 - Forks: 24
swsoyee/TCC-GUI
📊 Graphical User Interface for TCC package
Language: R - Size: 37.7 MB - Last synced at: 13 days ago - Pushed at: about 1 year ago - Stars: 46 - Forks: 17
PMBio/Health-Privacy-Challenge
The starter kit for the CAMDA 2025 Health Privacy Challenge.
Language: Python - Size: 43 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 5 - Forks: 5
viktormiok/tigaRcycle
An R package for utilities to guide in-depth detection of circadian signals from omics time series data
Language: Jupyter Notebook - Size: 3.92 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 2 - Forks: 1
BgeeDB/BgeeDB_R
Source code of the R packge BgeeDB to use data from the Bgee database
Language: R - Size: 576 KB - Last synced at: 14 days ago - Pushed at: 3 months ago - Stars: 16 - Forks: 6
dmnfarrell/smallrnaseq
small rna-seq analysis package
Language: Python - Size: 8.32 MB - Last synced at: 2 days ago - Pushed at: over 2 years ago - Stars: 30 - Forks: 19
epigen/spilterlize_integrate
A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.
Language: R - Size: 96.7 KB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 18 - Forks: 3
epigen/dea_limma
A Snakemake workflow and MrBiomics module for performing and visualizing differential (expression) analyses (DEA) on NGS data powered by the R package limma.
Language: R - Size: 147 KB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 26 - Forks: 2
epigen/enrichment_analysis
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
Language: Python - Size: 1.91 MB - Last synced at: 9 days ago - Pushed at: 3 months ago - Stars: 36 - Forks: 3
igordot/sns
Analysis pipelines for genomic sequencing data
Language: Shell - Size: 522 KB - Last synced at: 12 days ago - Pushed at: about 1 month ago - Stars: 67 - Forks: 28
kGorze/RNA-Seq-Nextflow
A reproducible, scalable, and containerized RNA-Seq analysis pipeline implemented in Nextflow. Features modular design with quality control (FastQC/MultiQC), alignment (STAR/HISAT2), quantification (Salmon/featureCounts), and differential expression analysis (DESeq2) components. Includes Docker containerization and CI/CD with GitHub Actions.
Language: HTML - Size: 8.63 MB - Last synced at: 10 days ago - Pushed at: 16 days ago - Stars: 0 - Forks: 0
daniel-munro/ratgtex-pipeline
Analysis pipeline for RatGTEx
Language: Python - Size: 8.44 MB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 3 - Forks: 0
epigen/open_pipelines
Pipelines for NGS data preprocessing by the Bock lab and friends
Language: Python - Size: 549 KB - Last synced at: 9 days ago - Pushed at: over 2 years ago - Stars: 21 - Forks: 11
HKU-BAL/Clair3-RNA
Clair3-RNA - a long-read small variant caller for RNA sequencing data
Language: Python - Size: 528 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 22 - Forks: 1
nf-core/differentialabundance
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Language: Nextflow - Size: 9.66 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 78 - Forks: 45
deeptools/deepTools
Tools to process and analyze deep sequencing data.
Language: Python - Size: 121 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 714 - Forks: 218
mkayasth/neuroblastomaRNASeq
RNA-seq counts matrix analysis in Neuroblastoma for identifying signature genes in ALT phenotype.
Language: R - Size: 649 KB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 0 - Forks: 0
prokischlab/omicsDiagnostics
This repository contains different scripts to automate and visualize analysis performed for the "Integration of proteomics with genomics and transcriptomics increases the diagnosis rate of Mendelian disorders"
Language: R - Size: 132 MB - Last synced at: 17 days ago - Pushed at: 17 days ago - Stars: 5 - Forks: 0
isaacvock/fastq2EZbakR
Significant improvement and extension of bam2bakR
Language: Python - Size: 26.6 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 3 - Forks: 0
t-neumann/slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
Language: Python - Size: 39.4 MB - Last synced at: 17 days ago - Pushed at: 11 months ago - Stars: 46 - Forks: 23
bpucker/Overview
Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.
Size: 153 KB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 1 - Forks: 0
ElementoLab/scTCRseq
Processing of single cell RNAseq data for the recovery of TCRs in python
Language: Python - Size: 23.4 KB - Last synced at: 16 days ago - Pushed at: over 4 years ago - Stars: 28 - Forks: 4
pblumenkamp/Curare
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments
Language: Python - Size: 47.2 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 8 - Forks: 1
maxplanck-ie/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
Language: Python - Size: 154 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 396 - Forks: 87
sanjaynagi/rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
Language: Jupyter Notebook - Size: 99.5 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 18 - Forks: 9
almeidasilvaf/SEA_paper
Code and data associated with the paper 'The Soybean Expression Atlas v2: a comprehensive database of over 5000 RNA-seq samples'
Language: JavaScript - Size: 43 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 1 - Forks: 0
nf-core/dualrnaseq
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
Language: Nextflow - Size: 45 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 22 - Forks: 35
nf-core/circrna
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Language: Nextflow - Size: 70.3 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 54 - Forks: 30
microsoft/scFM-dataselection
Investigating the role of pre-training dataset size and diversity on the performance of single-cell foundation models
Language: Jupyter Notebook - Size: 5.85 MB - Last synced at: 4 days ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 1
microsoft/scFM-datamix
Assessing the influence of training data composition on single-cell foundation model performance
Language: Jupyter Notebook - Size: 6.74 MB - Last synced at: 4 days ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 1
connor122721/nf-eqtls
Nextflow pipeline for disease eQTL mapping and follow up analyses
Language: R - Size: 12 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 0 - Forks: 0
guma44/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
Language: Jupyter Notebook - Size: 13.3 MB - Last synced at: 9 days ago - Pushed at: 9 months ago - Stars: 152 - Forks: 50
epigen/rnaseq_pipeline
RNA-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.
Language: Python - Size: 60.5 KB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 2 - Forks: 0
Novartis/cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Language: Python - Size: 203 KB - Last synced at: 21 days ago - Pushed at: about 1 year ago - Stars: 61 - Forks: 34
dtm2451/dittoSeq
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
Language: R - Size: 18.7 MB - Last synced at: 16 days ago - Pushed at: 7 months ago - Stars: 198 - Forks: 18
MaayanLab/biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Language: HTML - Size: 67.7 MB - Last synced at: 19 days ago - Pushed at: 5 months ago - Stars: 114 - Forks: 30
havelhakimi/gene-expression
Agglomerative based clustering on gene expression dataset
Language: Jupyter Notebook - Size: 1.26 MB - Last synced at: 21 days ago - Pushed at: 21 days ago - Stars: 8 - Forks: 0
timbitz/Whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
Language: Julia - Size: 21.1 MB - Last synced at: 9 days ago - Pushed at: over 1 year ago - Stars: 110 - Forks: 22
CelVoxes/ceLLama
Cell type annotation with local Large Language Models (LLMs) - Ensuring privacy and speed with extensive customized reports
Language: R - Size: 84.9 MB - Last synced at: 12 days ago - Pushed at: 6 months ago - Stars: 147 - Forks: 6
ZJUFanLab/CellTalkDB
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
Language: R - Size: 18.5 MB - Last synced at: 6 days ago - Pushed at: 10 months ago - Stars: 30 - Forks: 5
slowkow/picardmetrics
:vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.
Language: Shell - Size: 9.21 MB - Last synced at: 11 days ago - Pushed at: over 7 years ago - Stars: 41 - Forks: 7
popitsch/rnalib
rnalib: a python-based transcriptomics library
Language: Jupyter Notebook - Size: 328 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 10 - Forks: 1
HorvathLab/NGS
Next-Gen Sequencing tools from the Horvath Lab
Language: Python - Size: 313 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 40 - Forks: 17
RiyaDua/Oral_cancer_gene_identification
This project was my Master's (Biotechnology) Thesis project where we aimed to develop a machine learning model that identifies Oral cancer candidate genes.
Language: R - Size: 32.2 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 0 - Forks: 0
daniel-munro/ratgtex-server-data
Process RatGTEx pipeline results into data files for the RatGTEx site
Language: R - Size: 104 KB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 0 - Forks: 0